Integrating Contact Tracers Into Point-of-Care Testing Workflow to Accelerate the Tracing of People With Exposure to COVID-19, August-December 2020, New York City.

OBJECTIVES: We assessed the timeliness of contact tracing following rapid-positive COVID-19 test result at point-of-care testing (POCT) sites in New York City (NYC). DESIGN: Interviewed case-patients to elicit exposed contacts and conducted COVID-19 exposure notifications. SETTINGS: Twenty-two COVID-19 POCT sites in NYC, the 2 NYC international airports, and 1 ferry terminal. PARTICIPANTS: Case-patients with rapid-positive COVID-19 test results and their named contacts. MAIN OUTCOME MEASURES: We quantified the proportions of interviewed individuals with COVID-19 and notified contacts and assessed the timeliness between the dates of the rapid-positive COVID-19 test results and the interviews or notifications. RESULTS: In total, 11 683 individuals with rapid-positive COVID-19 test results were referred for contact tracing on the day of their diagnosis; 8878 (76) of whom were interviewed within 1 day of diagnosis, of whom 5499 (62%) named 11 486 contacts. A median of 1.24 contacts were identified from each interview. The odds of eliciting contacts were significantly higher among individuals reporting COVID-19 symptoms than among persons with no symptoms (51% vs 36%; adjusted odds ratio [aOR] = 1.37; 95% confidence interval [CI], 1.11-1.70) or living with 1 or more persons than living alone (89% vs 38%; aOR = 12.11; 95% CI, 10.73-13.68). Among the 8878 interviewed case-patients, 8317 (94%) were interviewed within 1 day of their rapid-positive COVID-19 test results and 91% of contact notifications were completed within 1 day of contact identification. The median interval from test result to interview date and from case investigation interview to contact notification were both 0 days (IQR = 0). CONCLUSIONS: The integration of contact tracers into COVID-19 POCT workflow achieved timely case investigation and contact notification. Accelerated contact tracing can be used to curb COVID-19 transmission during local outbreaks.

Genomic resources for Asian (Elephas maximus) and African savannah elephant (Loxodonta africana) conservation and health research.

We provide novel genomic resources to help understand the genomic traits involved in elephant health and to aid conservation efforts. We sequence 11 elephant genomes (5 African savannah, 6 Asian) from North American zoos, including 9 de novo assemblies. We estimate elephant germline mutation rates and reconstruct demographic histories. Finally, we provide an in-solution capture assay to genotype Asian elephants. This assay is suitable for analyzing degraded museum and noninvasive samples, such as feces and hair. The elephant genomic resources we present here should allow for more detailed and uniform studies in the future to aid elephant conservation efforts and disease research.

Manipulating animal social interactions to enhance translocation impact.

Species' ecological interactions, evolutionary trajectories, and survival strategies are intertwined with their social relationships. Conservation translocations can disrupt social systems, interrupting the mechanisms driving population and ecosystem trends. We outline a research framework to provide targeted tools for translocation practitioners, where appropriate, while advancing the theoretical understanding of social resiliency.

Poaching of African elephants indirectly decreases population growth through lowered orphan survival.

Prolonged maternal care is vital to the well-being of many long-lived mammals.1 The premature loss of maternal care, i.e., orphaning, can reduce offspring survival even after weaning is complete.2-5 However, ecologists have not explicitly assessed how orphaning impacts population growth. We examined the impact of orphaning on population growth in a free-ranging African elephant population, using 19 years of individual-based demographic monitoring data. We compared orphan and nonorphan survival, performed a sensitivity analysis to understand how population growth responds to the probability of being orphaned and orphan survival, and investigated how sensitivity to these orphan parameters changed with level of poaching. Orphans were found to have lower survival compared to nonorphaned age mates, and population growth rate was negatively correlated with orphaning probability and positively correlated with orphan survival. This demonstrates that, in addition to its direct effects, adult elephant death indirectly decreases population growth through orphaning. Population growth rate's sensitivity to orphan survival increased for the analysis parameterized using only data from years of more poaching, indicating orphan survival is more important for population growth as orphaning increases. We conclude that orphaning substantively decreases population growth for elephants and should not be overlooked when quantifying the impacts of poaching. Moreover, we conclude that population models characterizing systems with extensive parental care benefit from explicitly incorporating orphan stages and encourage research into quantifying effects of orphaning in other social mammals of conservation concern.

Behavioral patterns of bats at a wind turbine confirm seasonality of fatality risk.

Bat fatalities at wind energy facilities in North America are predominantly comprised of migratory, tree-dependent species, but it is unclear why these bats are at higher risk. Factors influencing bat susceptibility to wind turbines might be revealed by temporal patterns in their behaviors around these dynamic landscape structures. In northern temperate zones, fatalities occur mostly from July through October, but whether this reflects seasonally variable behaviors, passage of migrants, or some combination of factors remains unknown. In this study, we examined video imagery spanning one year in the state of Colorado in the United States, to characterize patterns of seasonal and nightly variability in bat behavior at a wind turbine. We detected bats on 177 of 306 nights representing approximately 3,800 hr of video and > 2,000 discrete bat events. We observed bats approaching the turbine throughout the night across all months during which bats were observed. Two distinct seasonal peaks of bat activity occurred in July and September, representing 30% and 42% increases in discrete bat events from the preceding months June and August, respectively. Bats exhibited behaviors around the turbine that increased in both diversity and duration in July and September. The peaks in bat events were reflected in chasing and turbine approach behaviors. Many of the bat events involved multiple approaches to the turbine, including when bats were displaced through the air by moving blades. The seasonal and nightly patterns we observed were consistent with the possibility that wind turbines invoke investigative behaviors in bats in late summer and autumn coincident with migration and that bats may return and fly close to wind turbines even after experiencing potentially disruptive stimuli like moving blades. Our results point to the need for a deeper understanding of the seasonality, drivers, and characteristics of bat movement across spatial scales.

Strongylid infection varies with age, sex, movement and social factors in wild African elephants.

Comparing parasitic infection among individuals of wildlife populations can provide insight into factors that influence wildlife disease ecology. Strongylids are parasitic worms that infect the intestinal tract of vertebrates, and infection with strongylids can be approximated by counting strongylid eggs in dung samples. Here we tested for correlations between strongylid egg counts and 18 different individual characteristics, environmental and social factors in individually known wild African elephants. We counted more eggs in the dung samples of younger elephants and females relative to mature elephants and males. We also found that elephants spending more time outside reserves shed more strongylid eggs than elephants that were more often within reserves. Elephants that were less socially integrated, as measured by how much aggression they received from other elephants, shed fewer strongylid eggs; relatedly, socially isolated orphan elephants that had left their family shed fewer strongylid eggs than elephants that remained with their family. Our results suggest that landscapes altered by livestock grazing and social disruption caused by humans may impact parasitic infection in wildlife.

Elephant behavior toward the dead: A review and insights from field observations.

Many nonhuman animals have been documented to take an interest in their dead. A few socially complex and cognitively advanced taxa-primates, cetaceans, and proboscideans-stand out for the range and duration of behaviors that they display at conspecific carcasses. Here, we review the literature on field observations of elephants at carcasses to identify patterns in behaviors exhibited. We add to this literature by describing elephant responses to dead elephants in the Samburu National Reserve, northern Kenya. The literature review indicated that behavior of elephants at carcasses most often included approaches, touching, and investigative responses, and these occurred at varying stages of decay, from fresh carcasses to scattered and sun-bleached bones. During our own observations, we also witnessed elephants visiting and revisiting carcasses during which they engaged in extensive investigative behavior, stationary behavior, self-directed behavior, temporal gland streaming, and heightened social interactions with other elephants in the vicinity of a carcass. Elephants show broad interest in their dead regardless of the strength of former relationships with the dead individual. Such behaviors may allow them to update information regarding their social context in this highly fluid fission-fusion society. The apparent emotionality and widely reported inter-individual differences involved in elephant responses to the dead deserve further study. Our research contributes to the growing discipline of comparative thanatology to illuminate the cognition and context of nonhuman animal response to death, particularly among socially complex species.

Inter-generational change in African elephant range use is associated with poaching risk, primary productivity and adult mortality.

Repeated use of the same areas may benefit animals as they exploit familiar sites, leading to consistent home ranges over time that can span generations. Changing risk landscapes may reduce benefits associated with home range fidelity, however, and philopatric animals may alter movement in response to new pressures. Despite the importance of range changes to ecological and evolutionary processes, little tracking data have been collected over the long-term nor has range change been recorded in response to human pressures across generations. Here, we investigate the relationships between ecological, demographic and human variables and elephant ranging behaviour across generations using 16 years of tracking data from nine distinct female social groups in a population of elephants in northern Kenya that was heavily affected by ivory poaching during the latter half of the study. Nearly all groups-including those that did not experience loss of mature adults-exhibited a shift north over time, apparently in response to increased poaching in the southern extent of the study area. However, loss of mature adults appeared to be the primary indicator of range shifts and expansions, as generational turnover was a significant predictor of range size increases and range centroid shifts. Range expansions and northward shifts were associated with higher primary productivity and lower poached carcass densities, while westward shifts exhibited a trend to areas with higher values of primary productivity and higher poached carcass densities relative to former ranges. Together these results suggest a trade-off between resource access, mobility and safety. We discuss the relevance of these results to elephant conservation efforts and directions meriting further exploration in this disrupted society of a keystone species.

Orphaned female elephant social bonds reflect lack of access to mature adults.

Compensatory social behavior in nonhuman animals following maternal loss has been documented, but understanding of how orphans allocate bonding to reconstruct their social networks is limited. Successful social integration may be critical to survival and reproduction for highly social species and, therefore, may be tied to population persistence. We examined the social partners involved in affiliative interactions of female orphans and non-orphans in an elephant population in Samburu, northern Kenya that experienced heightened adult mortality driven by drought and intense ivory poaching. We contrasted partners across different competitive contexts to gain insight to the influence of resource availability on social interactions. Though the number of partners did not differ between orphans and non-orphans, their types of social partners did. Orphans interacted with sisters and matriarchs less while feeding than did non-orphans, but otherwise their affiliates were similar. While resting under spatially concentrated shade, orphans had markedly less access to mature adults but affiliated instead with sisters, bulls, and age mates. Orphan propensity to strengthen bonds with non-dominant animals appears to offer routes to social integration following maternal loss, but lack of interaction with adult females suggests orphans may experience decreased resource access and associated fitness costs in this matriarchal society.

Research Priorities from Animal Behaviour for Maximising Conservation Progress.

Poor communication between academic researchers and wildlife managers limits conservation progress and innovation. As a result, input from overlapping fields, such as animal behaviour, is underused in conservation management despite its demonstrated utility as a conservation tool and countless papers advocating its use. Communication and collaboration across these two disciplines are unlikely to improve without clearly identified management needs and demonstrable impacts of behavioural-based conservation management. To facilitate this process, a team of wildlife managers and animal behaviour researchers conducted a research prioritisation exercise, identifying 50 key questions that have great potential to resolve critical conservation and management problems. The resulting agenda highlights the diversity and extent of advances that both fields could achieve through collaboration.

Vertical Transmission of Social Roles Drives Resilience to Poaching in Elephant Networks.

Network resilience to perturbation is fundamental to functionality in systems ranging from synthetic communication networks to evolved social organization [1]. While theoretical work offers insight into causes of network robustness, examination of natural networks can identify evolved mechanisms of resilience and how they are related to the selective pressures driving structure. Female African elephants (Loxodonta africana) exhibit complex social networks with node heterogeneity in which older individuals serve as connectivity hubs [2, 3]. Recent ivory poaching targeting older elephants in a well-studied population has mirrored the targeted removal of highly connected nodes in the theoretical literature that leads to structural collapse [4, 5]. Here we tested the response of this natural network to selective knockouts. We find that the hierarchical network topology characteristic of elephant societies was highly conserved across the 16-year study despite ∼70% turnover in individual composition of the population. At a population level, the oldest available individuals persisted to fill socially central positions in the network. For analyses using known mother-daughter pairs, social positions of daughters during the disrupted period were predicted by those of their mothers in years prior, were unrelated to individual histories of family mortality, and were actively built. As such, daughters replicated the social network roles of their mothers, driving the observed network resilience. Our study provides a rare bridge between network theory and an evolved system, demonstrating social redundancy to be the mechanism by which resilience to perturbation occurred in this socially advanced species.